PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G002400.1
Common NamePOPTR_0001s03970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 136aa    MW: 15544.9 Da    PI: 8.2318
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G002400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.15.6e-213691259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                        +Dg++W+KYGqK +k+    r+Y+rC  ++C++kk+ e s+  p+ + i+Yeg+H h 
  Potri.001G002400.1 36 EDGFEWKKYGQKFIKNIGKFRGYFRCQKRNCMAKKRAEWSN--PENLRIVYEGSHSHA 91
                        7*************************************998..**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-202991IPR003657WRKY domain
PROSITE profilePS5081115.7783093IPR003657WRKY domain
SuperFamilySSF1182902.09E-193291IPR003657WRKY domain
SMARTSM007744.6E-203592IPR003657WRKY domain
PfamPF031061.0E-193690IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSEVSPTRET SMETEEDKEE QQQHTDRGRR RLVLPEDGFE WKKYGQKFIK NIGKFRGYFR  60
CQKRNCMAKK RAEWSNPENL RIVYEGSHSH ASSTQDSSSA SSQGTPSSSA ANQYNLYTQF  120
FGNQPASSTH DQDHT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G002400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368530.16e-99probable WRKY transcription factor 3
TrEMBLU5GSI91e-97U5GSI9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s03970.12e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1895055
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.29e-10WRKY DNA-binding protein 57