PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G004900.1

Common Name

POPTR_0001s04210g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 157aa MW: 17966.4 Da PI: 5.1127

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G004900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.6	4.6e-07	59	116	6	63
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +e+ kqk Re rr+R+ Kk+ ++e e+k + eN+ Lk+++e+ ++e+ l+s++ Potri.001G004900.1 59 KEMQKQKKRETDRRYRKNKKKAVQETENKLAMTIIENENLKSTVEKFRQEIFHLTSQL 116 899************************************************9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14686	4.79E-4	59	109	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.4E-4	59	116	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MPSTIPLFAA PAPAPAGLEE EEEDENPLII SFLTVPTPSS ATDLHLPPHV YYSNGTVTKE 60 MQKQKKRETD RRYRKNKKKA VQETENKLAM TIIENENLKS TVEKFRQEIF HLTSQLKLIY 120 QRFETIYTEL EKEIECARTE NELTGCLLND PNTINI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G004900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299106.1	1e-111	uncharacterized protein LOC7457698
TrEMBL	B9GLE6	1e-110	B9GLE6_POPTR; Uncharacterized protein
STRING	POPTR_0001s04210.1	1e-110	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17134	3	8

Link Out ? help Back to Top
Phytozome	Potri.001G004900.1
Entrez Gene	7457698