PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G013200.2
Common NamePOPTR_0001s05070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 231aa    MW: 24502.5 Da    PI: 9.3555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G013200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-083459227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        k +lC+ +     Ck+Gd+C+FaHg+
  Potri.001G013200.2 34 KSRLCNKYNTVEGCKFGDKCHFAHGE 59
                        6789999999999***********96 PP
2zf-CCCH35.22e-11197221126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C +f + G C +GdrC+FaHg
  Potri.001G013200.2 197 FKTKICENFNK-GSCTFGDRCHFAHG 221
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-132962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-83162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2813260IPR000571Zinc finger, CCCH-type
SMARTSM003560.00563259IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-53459IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.1E-1494175IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.3E-16103175IPR004088K Homology domain, type 1
SMARTSM003224.0E-11103173IPR004087K Homology domain
PROSITE profilePS5008414.131104168IPR004088K Homology domain, type 1
CDDcd001051.32E-13106168No hitNo description
PfamPF000136.9E-11106169IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.1E-16194227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9196226IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868196223IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9197221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLNVGGSPAL PPASRNQGVP TLSYQDRSSP PSVKSRLCNK YNTVEGCKFG DKCHFAHGEW  60
ELGKASAAPS YEDPRAMGPI PGRMSRHMEH PHQGHGAAAS FGSSATTKIS IDASLAGAII  120
GKNGVNSKHI CRVTGAKLSI RDHEADPKKR SIELEGSFDQ ISQASDMVRQ LISNVGQASG  180
PPIKNQAMHS SGGSNNFKTK ICENFNKGSC TFGDRCHFAH GAEELRKSGM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.31960.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G013200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2396550.0FJ239655.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396560.0FJ239656.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396570.0FJ239657.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396580.0FJ239658.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396590.0FJ239659.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396600.0FJ239660.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396610.0FJ239661.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396620.0FJ239662.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396630.0FJ239663.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396640.0FJ239664.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396650.0FJ239665.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396660.0FJ239666.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396670.0FJ239667.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396680.0FJ239668.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396690.0FJ239669.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396700.0FJ239670.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396710.0FJ239671.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396720.0FJ239672.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396730.0FJ239673.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
GenBankFJ2396740.0FJ239674.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299153.11e-170zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R05e-76C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K2BQR41e-170A0A2K2BQR4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s05070.11e-171(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-54C3H family protein