PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G023500.1
Common NamePOPTR_0001s06090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 477aa    MW: 53859.7 Da    PI: 6.284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G023500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.41.7e-139494711374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+ e+a+  L+++s+laspdgd+mqR+aayft +La r+++ +++l kal+p+++s    see+ +++lf+e++P+l
  Potri.001G023500.1  49 LIHLLLACANHVAAGSIENANIGLEQISHLASPDGDTMQRIAAYFTAGLADRILKGWPGLHKALNPKQAS--LISEEILVQRLFFELFPFL 137
                         689*****************************************************************98..79***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k+s++++NqaI ea+ege++vHiiD++  +++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ +
  Potri.001G023500.1 138 KLSYVITNQAIIEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-I 223
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214
                         +++le+l+le+Lrvk+gEalaV++vlqlh+ll                                                           
  Potri.001G023500.1 224 VSKLENLDLENLRVKTGEALAVSSVLQLHTLLamddemhrrnspsgyknpnsnhfqrvqinqnrrtlgdwlerdvvnayssspdsalspls 314
                         999********************************************************************************99977544 PP

                GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                          + s     +  ++L++++slsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++r s er+kvE++l+g+ei+n++aceg++
  Potri.001G023500.1 315 lAASP----KMGSFLNALRSLSPKLMVITEQESNHNGFNLMERVTEALNFYAALFDCLESTVSRVSLERHKVEKMLFGEEIKNIIACEGTD 401
                         44444....4566****************************************************************************** PP

                GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         r+erhe+lekW  rle aGF+ +pls++   qa++ l+ ++ dgy+++ee+g+lv++W+drpL+svSaWr
  Potri.001G023500.1 402 RKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWR 471
                         *********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.38223451IPR005202Transcription factor GRAS
PfamPF035146.0E-13749471IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAGMAQEEGS SSVTSSPLQF FPWMPLSPGT GSPYPWLREL KSEDRGLCLI HLLLACANHV  60
AAGSIENANI GLEQISHLAS PDGDTMQRIA AYFTAGLADR ILKGWPGLHK ALNPKQASLI  120
SEEILVQRLF FELFPFLKLS YVITNQAIIE AMEGEKMVHI IDLNSFEPAQ WINLLQTLSA  180
RPEGPPHLRI TGIHEQKEVL EQMALRLTEE AEKLDIPFQF NPIVSKLENL DLENLRVKTG  240
EALAVSSVLQ LHTLLAMDDE MHRRNSPSGY KNPNSNHFQR VQINQNRRTL GDWLERDVVN  300
AYSSSPDSAL SPLSLAASPK MGSFLNALRS LSPKLMVITE QESNHNGFNL MERVTEALNF  360
YAALFDCLES TVSRVSLERH KVEKMLFGEE IKNIIACEGT DRKERHEKLE KWILRLELAG  420
FGIIPLSYHG RLQANRFLQS YGYDGYKIKE ENGCLVICWQ DRPLFSVSAW RFRRYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-63334732380Protein SCARECROW
5b3h_D4e-63334732380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G023500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299218.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLB9GM400.0B9GM40_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]