PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G023500.2
Common NamePOPTR_0001s06090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 474aa    MW: 53600.4 Da    PI: 6.284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G023500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.41.7e-139464681374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+ e+a+  L+++s+laspdgd+mqR+aayft +La r+++ +++l kal+p+++s    see+ +++lf+e++P+l
  Potri.001G023500.2  46 LIHLLLACANHVAAGSIENANIGLEQISHLASPDGDTMQRIAAYFTAGLADRILKGWPGLHKALNPKQAS--LISEEILVQRLFFELFPFL 134
                         689*****************************************************************98..79***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k+s++++NqaI ea+ege++vHiiD++  +++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ +
  Potri.001G023500.2 135 KLSYVITNQAIIEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-I 220
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214
                         +++le+l+le+Lrvk+gEalaV++vlqlh+ll                                                           
  Potri.001G023500.2 221 VSKLENLDLENLRVKTGEALAVSSVLQLHTLLamddemhrrnspsgyknpnsnhfqrvqinqnrrtlgdwlerdvvnayssspdsalspls 311
                         999********************************************************************************99977544 PP

                GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                          + s     +  ++L++++slsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++r s er+kvE++l+g+ei+n++aceg++
  Potri.001G023500.2 312 lAASP----KMGSFLNALRSLSPKLMVITEQESNHNGFNLMERVTEALNFYAALFDCLESTVSRVSLERHKVEKMLFGEEIKNIIACEGTD 398
                         44444....4566****************************************************************************** PP

                GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         r+erhe+lekW  rle aGF+ +pls++   qa++ l+ ++ dgy+++ee+g+lv++W+drpL+svSaWr
  Potri.001G023500.2 399 RKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWR 468
                         *********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.38220448IPR005202Transcription factor GRAS
PfamPF035145.9E-13746468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAQEEGSSSV TSSPLQFFPW MPLSPGTGSP YPWLRELKSE DRGLCLIHLL LACANHVAAG  60
SIENANIGLE QISHLASPDG DTMQRIAAYF TAGLADRILK GWPGLHKALN PKQASLISEE  120
ILVQRLFFEL FPFLKLSYVI TNQAIIEAME GEKMVHIIDL NSFEPAQWIN LLQTLSARPE  180
GPPHLRITGI HEQKEVLEQM ALRLTEEAEK LDIPFQFNPI VSKLENLDLE NLRVKTGEAL  240
AVSSVLQLHT LLAMDDEMHR RNSPSGYKNP NSNHFQRVQI NQNRRTLGDW LERDVVNAYS  300
SSPDSALSPL SLAASPKMGS FLNALRSLSP KLMVITEQES NHNGFNLMER VTEALNFYAA  360
LFDCLESTVS RVSLERHKVE KMLFGEEIKN IIACEGTDRK ERHEKLEKWI LRLELAGFGI  420
IPLSYHGRLQ ANRFLQSYGY DGYKIKEENG CLVICWQDRP LFSVSAWRFR RYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-63304702380Protein SCARECROW
5b3h_D4e-63304702380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G023500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299218.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K2BR770.0A0A2K2BR77_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]