PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G029800.10
Common NamePOPTR_0001s06700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 333aa    MW: 37049.6 Da    PI: 8.9823
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G029800.10genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.3e-104687445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Potri.001G029800.10 46 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                         5888*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-73790No hitNo description
SMARTSM003387.8E-943106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
PfamPF001705.7E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.56E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141445.8E-33129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADASPRTDI STDADTDDKN QRFDGSLSTA LVASDSSDRS KDKMDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFVSSS GDQSHSMSGN GAMAFDVEYA  120
RWLEDQNRQI NELRSAVNSH TGDTELRIII DGIMAHYDEV FRLKSNAAKA DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLVNQLEPL TDQQLVGIGN LQQSSQQAED ALSQGMEALQ  240
QSLAETLSSG SLGSSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMQRIL  300
TTRQSARALL AIHDYFSRLR ALSSLWLARP RE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.36150.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G029800.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446961.10.0transcription factor TGA2 isoform X1
RefseqXP_024446963.10.0transcription factor TGA2 isoform X1
RefseqXP_024446965.10.0transcription factor TGA2 isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2K2BRJ00.0A0A2K2BRJ0_POPTR; Uncharacterized protein
TrEMBLA0A385JHK20.0A0A385JHK2_POPTO; TGACG motif-binding factor 6
STRINGPOPTR_0001s06700.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-150TGACG motif-binding factor 6