PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G048200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 221aa    MW: 24837.9 Da    PI: 7.953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G048200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-184694254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Potri.001G048200.1 46 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 94
                        69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.28E-3345105No hitNo description
PROSITE profilePS5103221.00846103IPR001471AP2/ERF domain
PfamPF008472.8E-114695IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3346103IPR001471AP2/ERF domain
SMARTSM003801.8E-3946109IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2046105IPR016177DNA-binding domain
PRINTSPR003673.8E-114758IPR001471AP2/ERF domain
PRINTSPR003673.8E-116985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTPPLPIPLL KLLQSSLSEH FTNTYQTSRS FETFLFSITM TRPQQRYRGV RQRHWGSWVS  60
EIRHPLLKTR IWLGTFETAE DAARAYDEAA RLMCGPKSRT NFPYNPNEPQ SSSSKLLSAT  120
LAAKLHKCHM ASLQATKKNV TKQSYEAQCK KTFDTSHGIA GETVETGSKW QEGNWAGEDS  180
QVGNGDHQQH FKSLEAHHIE QMIEELLDCG SMEFCSAGST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1745103160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-1745107467ATERF1
3gcc_A7e-1745107467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G048200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080910.0AC208091.1 Populus trichocarpa clone JGIACSB09-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297803.31e-166ethylene-responsive transcription factor ERF003
SwissprotQ94AW54e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2K2BSG81e-165A0A2K2BSG8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14720.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]