PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G055000.1

Common Name

POPTR_0001s13970g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 146aa MW: 16162.4 Da PI: 9.7122

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G055000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.1	2.5e-15	10	95	13	97
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 +t + e+P rik+i+k d+d +++ a+a l+s + elf+ l+ +s a e+kr+ +k i aav+r + + dfl+d p Potri.001G055000.1 10 ETTTTRPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSAEVAIEKKRKIVKLDHIRAAVKRHHpTSDFLLDSLP 95 44455779**************************************************************976489***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.53E-18	10	95	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.5E-19	11	81	IPR009072	Histone-fold
Pfam	PF00808	4.3E-19	17	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MVESEENKTE TTTTRPEFPT GRIKRIMKLD KDTNKVNADA LFLVSSSTEL FLRFLAEKSA 60 EVAIEKKRKI VKLDHIRAAV KRHHPTSDFL LDSLPLPAQS SEKPASDNTS ARTVTDKPAP 120 AGTRRIDQFF AKAASEEVPV LINES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G055000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002297836.2	1e-100	nuclear transcription factor Y subunit C-5
TrEMBL	B9GMJ4	6e-99	B9GMJ4_POPTR; NF-YC family protein
STRING	POPTR_0001s13970.1	1e-99	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39
Representative plant	OGRP9472	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	5e-47	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Potri.001G055000.1
Entrez Gene	7460539