PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G058200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21179.4 Da    PI: 9.922
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G058200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.2e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienks rqvtfskRrng++KKA+ELSvLCd++va++ fs+ gklye+ss
  Potri.001G058200.1  9 KRIENKSSRQVTFSKRRNGLIKKAHELSVLCDVQVALLTFSNGGKLYEFSS 59
                        79***********************************************96 PP
2K-box57.75.2e-20831711098
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++++e +  ++a+Lk+  e Lq  qR+l G + ++ +l e  q  +qL+ +l+ +R++K++l+l++++ lq kek+l+een+ L+k++
  Potri.001G058200.1  83 GANDSEVYFGKYANLKSAAEILQIPQRKLEGTCPGEQTLSEFVQQATQLDAALTYVRARKMQLMLDSVKSLQDKEKMLKEENQLLQKQV 171
                         455667778899**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.174161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31276IPR002100Transcription factor, MADS-box
CDDcd002653.73E-39279No hitNo description
PRINTSPR004046.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-1585171IPR002487Transcription factor, K-box
PROSITE profilePS512979.51487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRKKVELKR IENKSSRQVT FSKRRNGLIK KAHELSVLCD VQVALLTFSN GGKLYEFSSV  60
GSIAKILERY KSHSEVMATS SKGANDSEVY FGKYANLKSA AEILQIPQRK LEGTCPGEQT  120
LSEFVQQATQ LDAALTYVRA RKMQLMLDSV KSLQDKEKML KEENQLLQKQ VVYNPETHSC  180
IQVAYFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-20175174MEF2 CHIMERA
6byy_B9e-20175174MEF2 CHIMERA
6byy_C9e-20175174MEF2 CHIMERA
6byy_D9e-20175174MEF2 CHIMERA
6bz1_A9e-20175174MEF2 CHIMERA
6bz1_B9e-20175174MEF2 CHIMERA
6bz1_C9e-20175174MEF2 CHIMERA
6bz1_D9e-20175174MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10060.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G058200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463173.11e-121MADS-box protein EJ2 isoform X1
TrEMBLA0A3N7E7L51e-120A0A3N7E7L5_POPTR; Uncharacterized protein
STRINGEOX997865e-52(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-50MIKC_MADS family protein