PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G062900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 223aa    MW: 25053.7 Da    PI: 9.9708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G062900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-1087133454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h+ +Er RR+ri  ++  L++l+P +    ++   Ka iL + ++Y++sL
  Potri.001G062900.1  87 SHSLAERVRRERISAKMKLLQSLVPGC----DQITGKALILDEIIRYVQSL 133
                         8*************************9....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-781137No hitNo description
SuperFamilySSF474599.95E-1581149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.96483133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1584144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-787133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-789139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVVGLDYSEE DQVTQVMTPT MGQMRKQSLP TKKVKKESKR EKRNPKSSVS TNLERQRPTK  60
RQKKAPPLEH PTGYVHVRAR RGEATDSHSL AERVRRERIS AKMKLLQSLV PGCDQITGKA  120
LILDEIIRYV QSLKDRIGSL EAELVLVNEM VINDFKVNYN METQAWQELF SSELQLPSDL  180
ESGSSQLSPF VGTSDAPTSV LQPHLTKPAT LKGHERLFSS VD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G062900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452218.11e-163transcription factor bHLH63 isoform X1
SwissprotQ93W882e-34BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A3N7EDC31e-161A0A3N7EDC3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16300.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-36bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]