PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G062900.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 171aa MW: 19045.7 Da PI: 10.5489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G062900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.7e-06	87	113	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR+ri ++ L++l+P + Potri.001G062900.2 87 SHSLAERVRRERISAKMKLLQSLVPGC 113 8************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-7	81	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.794	83	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-8	86	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVVGLDYSEE DQVTQVMTPT MGQMRKQSLP TKKVKKESKR EKRNPKSSVS TNLERQRPTK 60 RQKKAPPLEH PTGYVHVRAR RGEATDSHSL AERVRRERIS AKMKLLQSLV PGCDQELFSS 120 ELQLPSDLES GSSQLSPFVG TSDAPTSVLQ PHLTKPATLK GHERLFSSVD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G062900.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452268.1	1e-115	transcription factor bHLH63 isoform X2
Swissprot	Q93W88	1e-21	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A3N7FA83	1e-113	A0A3N7FA83_POPTR; Uncharacterized protein
STRING	POPTR_0001s13190.1	4e-67	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.001G062900.2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]