PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G063000.2
Common NamePOPTR_0011s05320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 154aa    MW: 17251.4 Da    PI: 5.7298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G063000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-06954255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r+  + +Er+RR++++  +++L +l P +        s  + L +A  YIk Lq
  Potri.001G063000.2  9 RTDRKTIERNRRNQMKALYSQLNSLEPVL--------SLPDQLDEAASYIKRLQ 54
                        778899******************99988........88999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-4558No hitNo description
SuperFamilySSF474599.42E-10580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-7967IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MENNPSSSRT DRKTIERNRR NQMKALYSQL NSLEPVLSLP DQLDEAASYI KRLQTNLERM  60
KEKKDNLMGT ERTNYASMSS CNGTTTGLRS PQIEVRETGS TLEVVLITGL DGQFMFNETI  120
RVLHEEGAEI INASFSVVED TVFHTIHSKV VVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G063000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436873.11e-106transcription factor bHLH162 isoform X2
SwissprotF4JIJ74e-43BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3N7E7Q01e-105A0A3N7E7Q0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05320.11e-103(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-45bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]