PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G063000.3
Common NamePOPTR_0011s05320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 161aa    MW: 18043.3 Da    PI: 6.5226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G063000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12961255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                        r+  + +Er+RR++++  +++L +l+P+ +   + +  ls  + L +A  YIk Lq
  Potri.001G063000.3  9 RTDRKTIERNRRNQMKALYSQLNSLVPHqS---SREPvLSLPDQLDEAASYIKRLQ 61
                        778899**********************54...55566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-12587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-6565No hitNo description
PROSITE profilePS5088811.528760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00981366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MENNPSSSRT DRKTIERNRR NQMKALYSQL NSLVPHQSSR EPVLSLPDQL DEAASYIKRL  60
QTNLERMKEK KDNLMGTERT NYASMSSCNG TTTGLRSPQI EVRETGSTLE VVLITGLDGQ  120
FMFNETIRVL HEEGAEIINA SFSVVEDTVF HTIHSKVVVA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G063000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436873.11e-114transcription factor bHLH162 isoform X2
SwissprotF4JIJ77e-49BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3N7E7Q01e-114A0A3N7E7Q0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05320.11e-111(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]