PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G079600.1
Common NamePOPTR_0001s11800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 238aa    MW: 26653.7 Da    PI: 4.6373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G079600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17110160255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+      r++lg+f++  +Aa+a++ a+ k++g
  Potri.001G079600.1 110 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDSDIDAARAYDCAAFKMRG 160
                         7********.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-31109169IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22110169IPR016177DNA-binding domain
PfamPF008475.1E-13110160IPR001471AP2/ERF domain
CDDcd000181.01E-29110168No hitNo description
SMARTSM003807.8E-36110174IPR001471AP2/ERF domain
PROSITE profilePS5103224.355110168IPR001471AP2/ERF domain
PRINTSPR003674.7E-13111122IPR001471AP2/ERF domain
PRINTSPR003674.7E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MATPKESSTL ELIRQHLLGD FTSTDEFISN LESTVASISV KLENSLSGSE SNSPVSDQSY  60
YSTQETCSFE IKSEIIDLTP PEPMFSDSSN QSPPPELVKM TDREETILRH YRGVRRRPWG  120
KFAAEIRDPT RKGSRVWLGT FDSDIDAARA YDCAAFKMRG RKAILNFPLE AGLSSSPPAT  180
GRKRRRVKRE EVLPESVDVS PENWDVEWSG EEVEGFSDEE QLSPLSRKPV LLYVSVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-27109169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185RKRRR
2181188RKRRRVKR
3182186KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G079600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299407.21e-173ethylene-responsive transcription factor ERF106
TrEMBLB9GK331e-171B9GK33_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11800.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-43ERF family protein