PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G083500.1
Common NamePOPTR_0001s11400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 472aa    MW: 52730.3 Da    PI: 7.7082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G083500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12295340454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  A  YIk+L
  Potri.001G083500.1 295 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAATYIKEL 340
                         799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4524196IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.85E-14290344No hitNo description
PROSITE profilePS5088817.028291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-18291355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17295356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-16297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEEILSSSSS SSLMSFAQET SSTLQQRLQF FLHSRPEWWV YSIFWQASKD ASGRLVLSLG  60
DGHFRGNKKY ASKESNKQNH SKFGFNLERK SLFNEDMDMD RLVEGDVAEW YYTVSVTRAF  120
AVGDGILGRA FSSGAFIWLT GDHELQIYDC ERVKEARMHG IQTFVCVSTP SGVLELGSPD  180
LISEDWGLVQ LAKSIFGADI NAGSVPKQAN QESQPQIPNR TVSNFLDFGM FSSPQKERTT  240
CLENQKESDT RKEPSGQGRS SSDSGRSDSD AGFTENNIGF KKRGRKPSGK ELPLNHVEAE  300
RQRRERLNHR FYALRSVVPN VSKMDKASLL ADAATYIKEL KSKVNELEGK LRAVSKKSKI  360
SGNANIYDNQ STSTSTMTNH IRPTPNYMSN NAMEVDVKIL GSEALIRVQS PDVNYPAARL  420
MDALRELEFS VHHASVSKVK ELVLQDVVII IPDGLVTEEV MRAAIFQRMQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-25231968192Transcription factor MYC3
4rqw_B4e-25231968192Transcription factor MYC3
4rs9_A4e-25231968192Transcription factor MYC3
4yz6_A4e-25231968192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G083500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2835780.0GU283578.1 Populus balsamifera isolate GIL14 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835790.0GU283579.1 Populus balsamifera isolate GIL14 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835800.0GU283580.1 Populus balsamifera isolate STL13 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835810.0GU283581.1 Populus balsamifera isolate STL13 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835840.0GU283584.1 Populus balsamifera isolate WHR03 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2836000.0GU283600.1 Populus balsamifera isolate NWL07 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2836020.0GU283602.1 Populus balsamifera isolate HAY07 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299425.10.0transcription factor MYC4
TrEMBLB9GK720.0B9GK72_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-67bHLH family protein