PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G087900.2

Common Name

POPTR_0001s10970g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 955aa MW: 104883 Da PI: 5.9042

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G087900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.7e-29	576	627	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek isle+l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Potri.001G087900.2 576 AEKMISLEVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 627 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.78	562	647	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-26	580	627	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-21	851	942	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-25	858	939	No hit	No description
PROSITE profile	PS51745	20.353	858	940	IPR000270	PB1 domain
SMART	SM00666	1.4E-23	858	940	IPR000270	PB1 domain
CDD	cd06407	3.23E-34	859	939	No hit	No description
Pfam	PF00564	4.0E-16	859	939	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MPEPTEVGGG GESEGRKSME LDLDLDSSWP LDQISFISSN PMSTFLISSS NEQPCSPLWA 60 FSDAADDRLL AAAAGGGQAS SSFVGGLRLS DNPIVLTCNP NSVTESKGEN DDNSKLPSPF 120 LGLMPIDNPD GYCIIKERMT RALRHFKEST EQHILAQVWA PVKNGGRYAL TTSGQPFVID 180 PHSNGLHQYR MVSLMYKFSV DGESDGELGL PGRVFRQKLP EWTPNVQYYS SKEYSRLDHA 240 LHYNVRGTVA LPVFEPSGQS CVGVVELIMT SQKINYAPEV DKVCKALEAV DLKSSEILDP 300 PSTQICNEGR QNALAEILEI LTMVCETHKL PLAQTWVPCM HRSVLAYGGG LKKSCTSFDG 360 SCNGQVCMST TDVAFYVVDA HMWGFREACL EHHLQKGQGV AGRAFFSHNL CFCPDITQFC 420 KTEYPLVHYA RMFGLTSCFA ICLRSSYTGD DDYILEFFLP PSFTDSREWK TLLGSILAIM 480 KQDFQSLQVA SGMDLEEEEG FVEMIQVSTN GRLDLRLECI QIPQSTKSPP DDNALLNGPI 540 VQIYPEKKQL MLDLDVIKNG GKKETKKPKE RKRGKAEKMI SLEVLQQYFT GSLKDAAKSL 600 GVCPTTMKRI CRQHGISRWP SRKIKKVNRS LSKLKRVIES VQGTEGAFST SSLPVAVGTI 660 SWPPNLNGRN QQNSPNSKSP EHHGDKNGSP TCRTPGSDVK AELGTGSNRS KTRGGSRGES 720 AGTPTSHGSC QGCPENESAP AKDPSVSPVH ERCIKAGGSP ELVLQQTREL NLSAAYSIPD 780 AFFATEAQEQ FGGMLIEDTG SSKDLSNLCP AMADAIVDER FPESKWTDPP SSDINPTQMI 840 AALSIAMPHV TSRQEMNSVT IKATYREDMI RFRISLSSGI AKLKEEVAKR LRLEVGTFDI 900 KYLDDDHEWI LIARDADLHE CMDVSRSSNS NMIRVSVHDA NANLGSSCES TWEI*

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MPEPTEVGGG GESEGRKSME LDLDLDSSWP LDQISFISSN PMSTFLISSS NEQPCSPLWA  60
FSDAADDRLL AAAAGGGQAS SSFVGGLRLS DNPIVLTCNP NSVTESKGEN DDNSKLPSPF  120
LGLMPIDNPD GYCIIKERMT RALRHFKEST EQHILAQVWA PVKNGGRYAL TTSGQPFVID  180
PHSNGLHQYR MVSLMYKFSV DGESDGELGL PGRVFRQKLP EWTPNVQYYS SKEYSRLDHA  240
LHYNVRGTVA LPVFEPSGQS CVGVVELIMT SQKINYAPEV DKVCKALEAV DLKSSEILDP  300
PSTQICNEGR QNALAEILEI LTMVCETHKL PLAQTWVPCM HRSVLAYGGG LKKSCTSFDG  360
SCNGQVCMST TDVAFYVVDA HMWGFREACL EHHLQKGQGV AGRAFFSHNL CFCPDITQFC  420
KTEYPLVHYA RMFGLTSCFA ICLRSSYTGD DDYILEFFLP PSFTDSREWK TLLGSILAIM  480
KQDFQSLQVA SGMDLEEEEG FVEMIQVSTN GRLDLRLECI QIPQSTKSPP DDNALLNGPI  540
VQIYPEKKQL MLDLDVIKNG GKKETKKPKE RKRGKAEKMI SLEVLQQYFT GSLKDAAKSL  600
GVCPTTMKRI CRQHGISRWP SRKIKKVNRS LSKLKRVIES VQGTEGAFST SSLPVAVGTI  660
SWPPNLNGRN QQNSPNSKSP EHHGDKNGSP TCRTPGSDVK AELGTGSNRS KTRGGSRGES  720
AGTPTSHGSC QGCPENESAP AKDPSVSPVH ERCIKAGGSP ELVLQQTREL NLSAAYSIPD  780
AFFATEAQEQ FGGMLIEDTG SSKDLSNLCP AMADAIVDER FPESKWTDPP SSDINPTQMI  840
AALSIAMPHV TSRQEMNSVT IKATYREDMI RFRISLSSGI AKLKEEVAKR LRLEVGTFDI  900
KYLDDDHEWI LIARDADLHE CMDVSRSSNS NMIRVSVHDA NANLGSSCES TWEI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G087900.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024449513.1	0.0	protein NLP7 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2BUQ7	0.0	A0A2K2BUQ7_POPTR; Uncharacterized protein
STRING	POPTR_0001s10970.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Potri.001G087900.2
Entrez Gene	7477839

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]