PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G088600.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 642aa    MW: 71381.4 Da    PI: 6.7329
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G088600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.12e-2476176198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +
  Potri.001G088600.5  76 FCKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--R 164
                         99****************************9666677789************************************************..4 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          +++el+v+v+r
  Potri.001G088600.5 165 GENGELRVGVRR 176
                         49999*****98 PP
2Auxin_resp103.52.7e-34202281183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+st + F v+Y+Pr+  s+F+++++k+++a+++k+ vGmRfkm+fe+eds+ rr+sGt+vgv+d++p +W++SkWrsLk
  Potri.001G088600.5 202 ASHAVSTLTLFVVYYKPRT--SQFIISLNKYLEAVSNKFVVGMRFKMRFEGEDSPDRRFSGTIVGVEDFSP-HWNDSKWRSLK 281
                         689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4066205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-4167191IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-2174176No hitNo description
PfamPF023621.7E-2276176IPR003340B3 DNA binding domain
SMARTSM010195.6E-2476178IPR003340B3 DNA binding domain
PROSITE profilePS5086312.30876178IPR003340B3 DNA binding domain
PfamPF065071.6E-31202281IPR010525Auxin response factor
PfamPF023098.1E-13510617IPR033389AUX/IAA domain
SuperFamilySSF542774.51E-14522605No hitNo description
PROSITE profilePS5174527.193529610IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MEQLEASTNQ ELNQRVPLFN LPSKILCRVI HTQLLAEQDT DEVYAQITLI PESDQIEPTS  60
PDSSSSEPPR PTVHSFCKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQP TPTQELVAKD  120
LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGENGEL RVGVRRVACQ  180
QSSMPSSVIS SQSMHLGVLA TASHAVSTLT LFVVYYKPRT SQFIISLNKY LEAVSNKFVV  240
GMRFKMRFEG EDSPDRRFSG TIVGVEDFSP HWNDSKWRSL KVQWDEPAPI PRPDRVSPWE  300
IEPCVASVPT NLSQPVTQKN KRPRPPFEIP ALDLSSTAST RNSGLTQSHD LTQLSVTGEG  360
KSYENHVMWH QKQTDVNGHS NSMSRTQTEG GWLASPHVNV SQHPFQDAME DSKSVSPWPV  420
FSGYSTPLSS KSKNDAILDP SDKGRKSEVP TSYRLFGIDL VNHSSSSTPI EVPAQLMSIC  480
SGATEGHVLG ALSAVDSDQK SEVSKEQKPE QLQKSPKEIQ SKQSSTSTRS RTKVQMQGIA  540
VGRAVDLTML KGYSQLIDEL EQLFDIKGQL HPRDKWEIVY TDDEGDMMLV GDDPWPEFCN  600
MVRRIYICSS QDVKRMGPGS KLPMLPIKGE GTVLSSDSAE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-157130349354Auxin response factor 1
4ldw_A1e-157130349354Auxin response factor 1
4ldw_B1e-157130349354Auxin response factor 1
4ldx_A1e-157130349354Auxin response factor 1
4ldx_B1e-157130349354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320324KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G088600.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445226.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K2BUM80.0A0A2K2BUM8_POPTR; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9