PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G099000.1
Common NamePOPTR_0001s09900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 168aa    MW: 18826.2 Da    PI: 6.1171
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G099000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30257559
                        S-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  5 ynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                        ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp++++itY+ eH h 
  Potri.001G099000.1  2 WAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSIFIITYTAEHSHA 57
                        89**********************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.641159IPR003657WRKY domain
PfamPF031067.5E-25256IPR003657WRKY domain
SMARTSM007744.3E-32258IPR003657WRKY domain
SuperFamilySSF1182909.15E-25259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-29259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MWAWRKYGQK PIKGSPYPRS YYRCSSLKGC LARKQVERSS TDPSIFIITY TAEHSHAHPT  60
RRSSLAGSTR IKRDAIKGTT PNIEPNMPTI KDQRSPNFDG LISPTTPSMT STEDELVQNL  120
SIKNEELLDQ GQILEGNESK EISVPDLVFS DDLFPTLEDL EGFLLDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-181601980Disease resistance protein RRS1
5w3x_D2e-181601980Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G099000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368768.11e-121probable WRKY transcription factor 29
SwissprotQ9FLX81e-38WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A3N7FWR61e-120A0A3N7FWR6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09900.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-29WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]