PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G100800.2
Common NamePOPTR_0001s09720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 658aa    MW: 73618.7 Da    PI: 6.7927
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G100800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.4e-094224591954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Potri.001G100800.2 422 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 459
                         554459******************************88 PP
2BELL117.46.8e-38284354272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         + elqk+k+kLls+leeVd+rY++y++q++ v+ssFeavag g+a +Y +lA+ka+SrhFrcL+d i+ qi
  Potri.001G100800.2 284 FIELQKRKTKLLSMLEEVDRRYRHYCDQMKDVVSSFEAVAGTGAASVYSALASKAMSRHFRCLRDGIVAQI 354
                         689******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-55222352IPR006563POX domain
PfamPF075261.1E-45228350IPR006563POX domain
PROSITE profilePS5007112.179400463IPR001356Homeobox domain
CDDcd000863.33E-11403464No hitNo description
SMARTSM003895.8E-9403467IPR001356Homeobox domain
SuperFamilySSF466895.99E-17404469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27406469IPR009057Homeodomain-like
PfamPF059208.8E-18420459IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MARELCEDKS RSMVSSGSFC YTDVSSSNPT IQTHLVNQIQ GFESNPEMFN LTTGMEMIGF  60
SKNLQQQKSD SNSAMWKGFF NKPPNNNNPG GPSSSKAIND STSGVFYQHE FSKPDFSTGI  120
SDSSNENLMV GPDHSAPWQE NRLLVDDSSL RCVFPCEGNE RPSQGLSLSL CSSNPSTIGL  180
QPFELRHTST HQNQDNPQEM RFFGKSPANI QQQMMQAANL HHQGQFQLRN SKYMGPTQDL  240
LNEFCSLGTK QGDALKQKLH KPKQWDDDQN GSSSRKQSLQ SLEFIELQKR KTKLLSMLEE  300
VDRRYRHYCD QMKDVVSSFE AVAGTGAASV YSALASKAMS RHFRCLRDGI VAQIHATKKG  360
MGDKDTIAPG TTRGETPRLK ILDQTLRQQR AFQHMSMMES HPWRPQRGLP ERSVSVLRAW  420
LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL EETKEQDNNM  480
ASSDGVTDLD ENSNGRPNQN PSSTDQKPTP DQLVRIDSEC LSSIISNPDK NDTNKSIKTF  540
QSHHLQHQQQ NFGNFGAMEL DFSSYNHHTA AGVSYANESV NNQNFNGGGV SLTLGLQQHG  600
GSGVSLAFSP GSQSSLFYPR DHIEDCQQVQ YSLLDGEGQN LPYRNLMGAQ LLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15409467563Homeobox protein Meis2
3k2a_B2e-15409467563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G100800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292921e-113CT029292.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447318.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-147BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2K2BV970.0A0A2K2BV97_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09720.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-148TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]