PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G110500.1
Common NamePOPTR_0001s08740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 178aa    MW: 18936.2 Da    PI: 5.232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G110500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-141461355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+r ++  g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a+++l+g
  Potri.001G110500.1 14 YHGIR-CR-GGKWVSEIREPRK---TTRIWLGTFPKPEMAAAAYDVAALALKG 61
                        89998.55.7*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.4521369IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-171371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-251370IPR001471AP2/ERF domain
SMARTSM003802.0E-241377IPR001471AP2/ERF domain
PfamPF008473.6E-81461IPR001471AP2/ERF domain
CDDcd000183.97E-131471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MATTSSNSKR HPMYHGIRCR GGKWVSEIRE PRKTTRIWLG TFPKPEMAAA AYDVAALALK  60
GNGAVLNFPS SVGTYPVPAT ASSTDIRNAA AAAAALKKAE LSYNEALVDQ PRNDHNAIGA  120
YLASSGEEFV DEEALFDMPN LLVDMAGGML LSPPRITSPP SDDSQGNSDG ESLWSYF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G110500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298066.11e-129ethylene-responsive transcription factor ERF026
SwissprotQ9CAN95e-50ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLB9GKP11e-128B9GKP1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08740.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-48ERF family protein