PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G113400.1
Common NamePOPTR_0001s08380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 242aa    MW: 27768.7 Da    PI: 9.1013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G113400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-0980129354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           h  +Er+RR+++ + +  Lr llP       ++K s ++   ++v YIk+ 
  Potri.001G113400.1  80 IIHRDIERQRRQEMANLYGSLRCLLPLkY---LKGKRSTSDHIHQTVYYIKHQ 129
                         5699***********************77...9******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-675134No hitNo description
SuperFamilySSF474591.7E-1175147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.10977129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-781129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-981147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDYISSVFQI DYNSTDDLVQ YFSSFPTQQQ TTPKDKVPLR PYEDCHDLAN KTQHGRRRKS  60
PIALGSVKDE NPNDNKKKKI IHRDIERQRR QEMANLYGSL RCLLPLKYLK GKRSTSDHIH  120
QTVYYIKHQE EKIQKLIDKK DELKRYLSTS SALENLEGCE RDTLTVRTRC VGVEVDINTA  180
LKKGFPLSRV LAILIEEGFS VVSCISTKVN ERMLHNIISE VTDGRSLDIS ELQQKLTSAI  240
V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15678RRKSPIALGSVKDENPNDNKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G113400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299575.11e-179transcription factor bHLH36
TrEMBLB9GKR81e-177B9GKR8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08380.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-36bHLH family protein