PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G114000.2

Common Name

POPTR_0001s08310g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRF

Protein Properties

Length: 178aa MW: 19738.7 Da PI: 10.2632

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G114000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.2e-24	112	155	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs++vl+++k+C+rH+hrgr+rsrk +e+ Potri.001G114000.2 112 HEPGRCRRTDGKKWRCSKEVLPDQKYCDRHIHRGRQRSRKLVEA 155 69**************************************9985 PP
2	QLQ	40.9	6.3e-15	40	74	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Ql++L+ Q l+yKy+ a+ PvP +L+++i+k Potri.001G114000.2 40 FTILQLHELELQSLIYKYIQAGFPVPYHLVLPIWK 74 7888******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.4E-4	38	74	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.234	39	74	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.0E-11	40	73	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.189	111	155	IPR014977	WRC domain
Pfam	PF08879	4.6E-21	113	154	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEGNRRNGRS RSPSIGLGVE LGRGGSSQRP ITGCKKPYGF TILQLHELEL QSLIYKYIQA 60 GFPVPYHLVL PIWKSVTASL GGLSSSLYQL YPSFMGCKCN PLYLEYKKGM EHEPGRCRRT 120 DGKKWRCSKE VLPDQKYCDR HIHRGRQRSR KLVEAASHSN ASTNLSISLP GIGSASA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.6517	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G114000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298083.2	1e-128	growth-regulating factor 10
Swissprot	Q6AWX7	1e-41	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	B9GKS4	1e-127	B9GKS4_POPTR; Uncharacterized protein
STRING	POPTR_0001s08310.1	1e-128	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-33	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Potri.001G114000.2
Entrez Gene	7490935

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]