PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G120200.3

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 173aa MW: 19432.5 Da PI: 6.9845

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G120200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	88.4	2e-27	10	120	2	113
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ a++ l+++l + ++ l ++ n + n ++++ Potri.001G120200.3 10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLFLPSASQFPLGHNLYSPSHNLLDDQIPNPTPNFLINQTH 100 577899****************************************999999988888888999988886666666655555555555555 PP YABBY 93 stsvsseklsenedeevprvp 113 ++ s+ ++ d+e+pr+p Potri.001G120200.3 101 VNDFSV-TVRGMADHELPRPP 120 555544.33555666666644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.7E-27	14	70	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSSSSSLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG 60 LFLPSASQFP LGHNLYSPSH NLLDDQIPNP TPNFLINQTH VNDFSVTVRG MADHELPRPP 120 VIHRRENHVI LLFSLLLFYQ ESLLQFEVIN VFSLFFFLGG KCFSLRQYSL EK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9156	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G120200.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006368172.1	5e-86	axial regulator YABBY 1
TrEMBL	B9N3P8	1e-84	B9N3P8_POPTR; Uncharacterized protein
STRING	POPTR_0001s00240.1	2e-85	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-24	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.001G120200.3