PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G122800.2
Common NamePOPTR_0001s00480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 720aa    MW: 79170.3 Da    PI: 6.6257
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G122800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.74.8e-973577182374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L ++Ae v +g++  aq +Larl+++ sp+g+p++R+a+yf+eAL+  l+ + ++ + a pp++ ++ +++ +++a+k++sevsP+++
  Potri.001G122800.2 357 LDQLCKAAELVGTGNFLHAQGILARLNQQLSPTGKPFHRAAFYFKEALQLLLLMNNNS-VTAPPPRSPTPFDVIFKMSAYKVLSEVSPLIQ 446
                         679*************************************************985555.5567888888899******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f ++t+Nqa+leav+ ++ +Hi+Dfdi+ G+QW++++q+L  R++g  sl+ T+++sp++++  el  ++++L++fA+e+g++fe +v+  
  Potri.001G122800.2 447 FVNFTCNQALLEAVDDADSIHIVDFDIGFGAQWASFMQELP-RNRGVRSLKTTAFASPSTHHPVELGLMRDNLTQFANEIGLSFELDVINF 536
                         ****************************************6.78999*****************************************977 PP

                GRAS 184 krle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         ++le  + +l  +r++++Ea++Vn+ +   +   ++ +l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y+ l++sl+
  Potri.001G122800.2 537 DSLEqnCYSLPFFRTNENEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYVHLLESLD 621
                         75551155777789999*********955544..4555555....*********************************************8 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a   +++++ +k+Er+ll+++i++ v  + ++     e++ +W+  + ++GF+pv++s+++++qa++++++++++g++ve++++ lvl+W+
  Potri.001G122800.2 622 AV-NATTDAVNKIERFLLQPRIESTVLGRLRA----PEKMPNWKTIFASVGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQALLVLCWQ 707
                         87.68999*******************99998....9****************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r+L+s+SaWr
  Potri.001G122800.2 708 RRELMSASAWR 718
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.235330698IPR005202Transcription factor GRAS
PfamPF035141.7E-94357718IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MRRSQSPPTS VSTLSSSSNG GAGGNTTNIT ATDKAVNPVS NERKDEWATE LQPIPSGLEF  60
VSSGARCGLG LEDWENMLSE PSQEQSFLRW IAGDVDDTQF GLKQLLQSGN NQLEYDGNAD  120
AGAGGGGLGI VDQGHGFESL SGIPCGVSSI GTNLAPFPGP GVSNVGSGLV APGSFSGLVN  180
YKNVGFGNNN SSVQSPVFSS SSNSVSLPLS LPPGMVYHHN QQQQIEASEE KPHILDPQVL  240
MNQQQSHNPH AQNPNLFLPL PFSQQENRPL HSQLKRHNSG GIDPISHVIP KAPFSVPGQE  300
FLLRKHQQQQ LGFPQGVQFL HQQLQQKPLM VKKEDLGVQQ QQQQQQQQQQ QQQHALLDQL  360
CKAAELVGTG NFLHAQGILA RLNQQLSPTG KPFHRAAFYF KEALQLLLLM NNNSVTAPPP  420
RSPTPFDVIF KMSAYKVLSE VSPLIQFVNF TCNQALLEAV DDADSIHIVD FDIGFGAQWA  480
SFMQELPRNR GVRSLKTTAF ASPSTHHPVE LGLMRDNLTQ FANEIGLSFE LDVINFDSLE  540
QNCYSLPFFR TNENEAVVVN FPIWCSSNQP SALPSLLRFI KQLSPKIVVS LDRGCDRSDL  600
PFPQHILHAL QSYVHLLESL DAVNATTDAV NKIERFLLQP RIESTVLGRL RAPEKMPNWK  660
TIFASVGFSP VTFSNFTETQ AECVVKRTPV RGFHVEKRQA LLVLCWQRRE LMSASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-3137571822375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G122800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368204.20.0scarecrow-like protein 27 isoform X2
RefseqXP_024442745.10.0scarecrow-like protein 27 isoform X1
SwissprotO813161e-121SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K2BWH30.0A0A2K2BWH3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s00480.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]