PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G125900.1

Common Name

POPTR_0001s00800g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 249aa MW: 27879.7 Da PI: 9.5411

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G125900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	7	27	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+++F + + H+r+H Potri.001G125900.1 7 CKICNRRFANGKAMGGHMRSH 27 *******************99 PP
2	zf-C2H2	10.8	0.0016	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k F++ L H +H Potri.001G125900.1 140 FKCETCKKGFRSYQALGGHRASH 162 89**********99999998887 PP
3	zf-C2H2	11.6	0.00089	191	213	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C k+F + L H ++H Potri.001G125900.1 191 FKCPFCEKVFDSGQALGGHKKVH 213 89**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.92E-5	2	32	No hit	No description
PROSITE profile	PS50157	9.785	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	5	27	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.7E-8	5	29	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	140	162	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.71E-8	140	213	No hit	No description
Pfam	PF13912	1.8E-10	140	164	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.034	140	167	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	142	162	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.949	191	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	191	213	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.9E-8	191	213	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEKTRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPP QETYNTLKKS PPETESTREP 60 TRRRSKRSRK SADEVAESMV KVTESSEQVS SISYLLAEED VALCLLMLSR DNWSEDAKQV 120 KKEDYLFGFT RAKYKSQGKF KCETCKKGFR SYQALGGHRA SHKKIKIHEE HEEGNGSGCG 180 EDNRSVGKRI FKCPFCEKVF DSGQALGGHK KVHFSYLPVT NAKISINFLD LNVPALEGTH 240 DDGEVSEA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G125900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453144.1	1e-149	zinc finger protein ZAT9
TrEMBL	A0A3N7FSN9	1e-148	A0A3N7FSN9_POPTR; Uncharacterized protein
STRING	POPTR_0001s00800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	4e-28	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.001G125900.1
Entrez Gene	18094020