PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G133900.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 225aa    MW: 24552.2 Da    PI: 10.6521
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G133900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind234.86.5e-7248224126301
           GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCs 214
                         +   + +++  + ++++ +k +k +k+++ ak+  +   k   +k+ ++k  +k++k +   ++k+ekk++d+ + ++++D s++P P Cs
  Potri.001G133900.2  48 VAPIHSISSADLAKSNSGTKPTKARKHKSAAKDSNQIPPKvlGPKQ-PKKISSKKTKGQITLEAKHEKKNLDIDIGKINFDPSGVPSPFCS 137
                         4555555555555555544444444444444444444333212222.2223333344444589**************************** PP

           GAGA_bind 215 CtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         CtG++r+CYkWG+GGWqS+CCt +iS +PLP+s++r+g R+agrKmS+ga+ klL kL+ae y+ls+p+D+k+hWA+HGtnkfvti+
  Potri.001G133900.2 138 CTGMPRVCYKWGAGGWQSSCCTDSISEHPLPMSSTRPGVRMAGRKMSNGAYVKLLLKLSAESYNLSHPLDMKNHWARHGTNKFVTIK 224
                         **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.0E-1063224IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-6461224IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKMGTNSRNH LIPEANFSWF YPGSFFSSLK TNSGFDRTQI DPQPGLPVAP IHSISSADLA  60
KSNSGTKPTK ARKHKSAAKD SNQIPPKVLG PKQPKKISSK KTKGQITLEA KHEKKNLDID  120
IGKINFDPSG VPSPFCSCTG MPRVCYKWGA GGWQSSCCTD SISEHPLPMS STRPGVRMAG  180
RKMSNGAYVK LLLKLSAESY NLSHPLDMKN HWARHGTNKF VTIK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G133900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822640.0FJ982264.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC7) gene, complete cds.
GenBankFJ9822650.0FJ982265.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368324.21e-166protein BASIC PENTACYSTEINE7
RefseqXP_024466290.11e-166protein BASIC PENTACYSTEINE7
RefseqXP_024466299.11e-166protein BASIC PENTACYSTEINE7
SwissprotO822863e-67BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLH1ZN481e-165H1ZN48_POPTR; GAGA-binding transcriptional activator
STRINGPOPTR_0001s01620.11e-164(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-65basic pentacysteine 7