PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G151700.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 441aa    MW: 49103.3 Da    PI: 6.7474
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G151700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.8e-15741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Potri.001G151700.3  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-10545No hitNo description
CDDcd002021.10E-15654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.6E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139198.4E-12283376IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAGPDDYEDH  60
RVSRLKSISM NKNREVKLLK RKPNYDHRVA EGVALDYNEG YRKVVDEDTS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSVVWDSLVP SRKRTCVNRP KPSPVEKLTK DLYTILHEQQ  180
SSCFSGSSEE DLLFDNETPM VSVEIGHGSV LIRHPSSIAR DEESEASSLS VENKQYSTNE  240
AYSHPVILPV HNENQSVNMT YPVTVKTKNL SGQGMQQEQL NRDKSPHEKV HILGSHNSPL  300
CSVDLNDILN FEEFARHLTN EEQQQLLKYL PPLDTAKLPN SIKSMFDSPQ FKENINCYQQ  360
LLSEGVFDLS LEAKSEDCKT LKRLTLSNLS KSKWVERYHL LKVCIDLFKV GTLLHENINS  420
SEGGHVILMA HCLLLLAAEV *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G151700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368951.10.0GATA transcription factor 26
SwissprotQ8W4H11e-149GAT26_ARATH; GATA transcription factor 26
TrEMBLU5GPN90.0U5GPN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-151GATA transcription factor 26