PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G154200.1
Common NamePOPTR_0001s15400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 346aa    MW: 38490 Da    PI: 6.1829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G154200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-20198248255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr ++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ kl+g
  Potri.001G154200.1 198 HYRGVRHRP-WGKYAAEIRDP---NrRGSRVWLGTFDTALEAARAYDRAAFKLRG 248
                         8*****888.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32197257IPR001471AP2/ERF domain
CDDcd000182.47E-31197256No hitNo description
SMARTSM003804.9E-36198262IPR001471AP2/ERF domain
PROSITE profilePS5103224.447198256IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-23198257IPR016177DNA-binding domain
PfamPF008471.8E-13198248IPR001471AP2/ERF domain
PRINTSPR003673.6E-10199210IPR001471AP2/ERF domain
PRINTSPR003673.6E-10222238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSTDVSTALE FIKHHLLGDL LSPIATSSSA SFCQFSTNTE ISTYETTGCC SQASTSDSST  60
AFPYFLDSPG PDFFVFSSDF SPAQDNKTNI FEFEAKPEII DLLTPKPLDS TSHLNSQPSS  120
SSSSSNSSNL FEFVKPQIIS HPVNNFFYEE SKPRVEPTRK PSLKISLPSR KSEWIQFSNT  180
NPQPVDDNSG VAVEEKKHYR GVRHRPWGKY AAEIRDPNRR GSRVWLGTFD TALEAARAYD  240
RAAFKLRGSK AILNFPLEAG RCDVRANEEG ERKRLRECDA EEREDVKRVM RVVKREEPER  300
DVPLTPSCCT AAWDICGDSK GVFNVPPLSP LSPHPSLGFP QLLVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-29197257161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-29197257464ATERF1
3gcc_A3e-29197257464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.41440.0bud
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G154200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089990.0AC208999.1 Populus trichocarpa clone POP021-B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368979.20.0ethylene-responsive transcription factor 6
SwissprotO803411e-64EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A2K2BY440.0A0A2K2BY44_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.19e-48ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]