PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G173600.1
Common NamePOPTR_0001s17350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 782aa    MW: 86609 Da    PI: 6.8475
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G173600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15440478341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +++CnCkks+Clk+YCeCfaag +C ++C+C +C Nk e
  Potri.001G173600.1 440 CRRCNCKKSRCLKLYCECFAAGIYCLDTCSCVNCINKPE 478
                         789*********************************976 PP
2TCR421.9e-13526564139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++kkgCnCkkskC kkYCeCf+ g+ C + C+Ce+C N 
  Potri.001G173600.1 526 RHKKGCNCKKSKCSKKYCECFQGGVGCCNGCRCEGCYNP 564
                         589**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.0E-16438479IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.825439566IPR005172CRC domain
PfamPF036381.6E-11441476IPR005172CRC domain
SMARTSM011143.6E-13526567IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.6E-9528563IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MPGSDVYRQS DIQPKPQLMP CFQKEVQSYS SSGCIDEHLA DPFKEDNIMN SSMSSLTSHK  60
ETTTKADDTN AGNGKATVLM SDQTGEELPS VSMNVFDATA REKETERFGE FLQCLSGNVD  120
DHVESDIFGG TFFGEQHHEL FSPQRDGAYK YSKESLGSLS KESVKEADQR HRGIRRHLHF  180
GAAISCKHAG NGTHETANLC LPGRQTDFES LVPPHVETRG ISGIWQARSC SQTATLWSSF  240
SPSACESVKS AQNYGNRAVS ACIPSGGDLH LNSFVRSESV GSEFSTSKKL GSNLHQQEEK  300
LMSDRDHYLC KEIDGIPVLS FLGEIYSHLG YEQQESQAAA GAGSSSYQSS SIMQPPCDSL  360
HLIPYEQQAS LCKGTMPSSE YADIVELNQM SPERNRWNTL MFFIQTFRLS VIPFQVAYVL  420
YLLVMLIRKK AKYTIKSEGC RRCNCKKSRC LKLYCECFAA GIYCLDTCSC VNCINKPEYE  480
DTVLDMRQQT EARNPLAFAP KVVNNATNSP ANMMEEGKWM KTSSSRHKKG CNCKKSKCSK  540
KYCECFQGGV GCCNGCRCEG CYNPYGNKTE TSYRRAERWN NPSREQLDTL ESHNDCIKAE  600
RPNQFSSTWE ELADIGHLTP PSHCLLGAVA SSGSLNIRDC SKQFLGQSQQ ESSVLSPSGY  660
LNWHHSPSSL TPKLYGCEAL PELSSDSFFC NMMEDATPET LKNTCTPSTE GVKSCSPNQK  720
WVSPPKIRSH ELRSSSSQGL RSGCKFILQD LPSFPPLTPY SKSQAAIHQN DGDHKASTGY  780
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1344356314120Protein lin-54 homolog
5fd3_B1e-1344356314120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G173600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462225.10.0uncharacterized protein LOC7490966
TrEMBLA0A3N7ECK30.0A0A3N7ECK3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-41Tesmin/TSO1-like CXC domain-containing protein