PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G191800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 443aa    MW: 48475.8 Da    PI: 6.2352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G191800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07347387954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L+ ++P        K++ a++L +A +Y+k L
  Potri.001G191800.1 347 ARQRRERISDRIRVLQGMVPGG-----SKMDTASMLDEAANYLKFL 387
                         69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.735338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13343402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-10344392No hitNo description
Gene3DG3DSA:4.10.280.102.3E-11346397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-5347387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDSLGWDVDS QVLTNSSSLW SNQQHDGVDL GEDIFHQIQE LQKTQTSAPQ LNSGSERHQE  60
VTRLVANTVL AKSSGAGTIC NWGDASAQEL YSSSLISKPF SVTCMADFSM GGQPRINTNG  120
LQNSKACVST GSLESLDCLL SATNSNTDTS VEDDGISMIF SDCRNLWNFA PNSSAAVSSG  180
ESENNTCNPG NKEMHCPVSE LDETVSHCSS DQYGKNRDCS QTKPVSTKRS NDHCSELKMG  240
LKHPFFDILQ SECSNQEGGF RLISDNPPKS KKPRSDKRPS SSNINFQQPS SSISSSIEEP  300
DPEAIAQMKE MIYRAAAFRP VNLGLEVAEK PKRKNVRIST DPQTVAARQR RERISDRIRV  360
LQGMVPGGSK MDTASMLDEA ANYLKFLRSQ VKALENLGHK LDSVNCPQPT NIAFSSLPFN  420
HSFPLQNHFP FQNPNHIHPS QG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G191800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465865.10.0transcription factor bHLH87
SwissprotQ8S3D22e-91BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A2K2C0880.0A0A2K2C088_POPTR; Uncharacterized protein
STRINGPOPTR_0001s19250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Representative plantOGRP10281610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]