PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G219100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 224aa    MW: 25759.6 Da    PI: 6.873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G219100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-08752346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +W+  Ed+++ +a  +++ +   +W++I+++++ g++  +++ ++ +
  Potri.001G219100.1  7 SWSRLEDKQFEQALVLFPEEtprRWEKISSYVP-GKSWREVRKHYED 52
                        6*****************99*************.***********76 PP
2Myb_DNA-binding43.95.7e-14106150347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  Potri.001G219100.1 106 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 150
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.497158IPR017930Myb domain
SMARTSM007172.6E-9456IPR001005SANT/Myb domain
PfamPF002497.5E-7753IPR001005SANT/Myb domain
SuperFamilySSF466893.8E-11762IPR009057Homeodomain-like
CDDcd001676.98E-7754No hitNo description
PROSITE profilePS5129419.44599155IPR017930Myb domain
SuperFamilySSF466894.97E-17100156IPR009057Homeodomain-like
SMARTSM007171.2E-10103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12103149IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-17103153IPR006447Myb domain, plants
PfamPF002491.4E-11106150IPR001005SANT/Myb domain
CDDcd001674.78E-9106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSSHLSSWSR LEDKQFEQAL VLFPEETPRR WEKISSYVPG KSWREVRKHY EDLVHDVLEI  60
DSGRVEVPLY DQDELWGDST TSLGGAAAES RSGKEREHTE RRKGTPWTEE EHRLFLIGLQ  120
KYGKGDWRSI SRNAVVSRTP TQVASHAQKY FLRLNSVKKE KKRSSIHDIT ATNATHSMAQ  180
TSHDPNWNFE LMDQSVDEPL SRPANFFHDQ GNPLAYQGFG FPM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G219100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461788.11e-166transcription factor SRM1
SwissprotQ9FNN62e-59SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2K2C1N61e-165A0A2K2C1N6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22660.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.19e-73MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]