PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G220700.3
Common NamePOPTR_0001s22790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 244aa    MW: 27184.7 Da    PI: 8.947
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G220700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.31.5e-12196239548
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                         +r +rk+kNRe+A rsR+RK+a+  eL  kv  Le+eN +Lkke
  Potri.001G220700.3 196 RRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENIKLKKE 239
                         799***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-12190239No hitNo description
SMARTSM003386.6E-4192242IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852194239IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-9196239No hitNo description
PfamPF001701.0E-10196239IPR004827Basic-leucine zipper domain
CDDcd147074.67E-16196242No hitNo description
PROSITE patternPS000360199214IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGVQTMASQS NGQQSHMQPC QLMRQTSWYN LTLNEVENQM GNLGKPLCSM NLDELLKNVW  60
STEANQSMGM DSESTATSSL QRQASFTLAR ALSGKTVAQV WKEIQEGQKK RFGQEMKVQE  120
REQTLGETTL EDFLVQAGLF TEATISPSLD LVTVAAVTPQ CFPQNMVLSS SPSTGTLSDS  180
TTSGWNRDAP EKSTERRLKR KIKNRESAAR SRARKQAYHN ELVSKVSRLE EENIKLKKEK  240
ICS*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G220700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840740.0AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298289.21e-177ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
RefseqXP_024449588.11e-177ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
SwissprotQ9LES34e-54AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLB9GI211e-176B9GI21_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22790.11e-176(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.35e-42bZIP family protein
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]