PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G232300.1

Common Name

POPTR_0001s23880g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 434aa MW: 47987.3 Da PI: 8.9696

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G232300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	376	396	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksF r++ L++H++++ Potri.001G232300.1 376 TCSQCGKSF-RPEKLHSHMKSC 396 6******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	9.7E-42	24	298	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MEVSSGIPTS CSSSGAGAGE VRRIHIIYFL SHNLGRIDQH PHLIRVHHSN RNGVYLRDVK 60 RWLADLRGKD MPKAFAWSYK RRYKKGYVWQ DLLDDDLITP ISDNEYVLKG SEILAPPANP 120 FVGSADGEKQ ENTGVEFVEN KAQNHEQRPS PNQICKDTTS RNTSSTEIPK ESPTFTSEIS 180 TVTDDSIEEE EEEEEDACKR NNSRDQEQID NKVEHSSFYT IFLGKSKKNQ DERKDNTSSI 240 EKMGTPSSFP SPSSSQSTFA RSKSYSTGTS KVLRNLITCG AVDTNDAALV LQSQKNKNKY 300 KPIDKPAGHI CKGEELGGSA RVFGTPWNQV QQQRQHNTAI ASRKSFDGAR SSKKQHNGFG 360 SPKVVSPAYK PVAVPTCSQC GKSFRPEKLH SHMKSCRGLK VLAKAASTYV EKTPSPSHNP 420 VDSASGDGYF LTN*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MEVSSGIPTS CSSSGAGAGE VRRIHIIYFL SHNLGRIDQH PHLIRVHHSN RNGVYLRDVK  60
RWLADLRGKD MPKAFAWSYK RRYKKGYVWQ DLLDDDLITP ISDNEYVLKG SEILAPPANP  120
FVGSADGEKQ ENTGVEFVEN KAQNHEQRPS PNQICKDTTS RNTSSTEIPK ESPTFTSEIS  180
TVTDDSIEEE EEEEEDACKR NNSRDQEQID NKVEHSSFYT IFLGKSKKNQ DERKDNTSSI  240
EKMGTPSSFP SPSSSQSTFA RSKSYSTGTS KVLRNLITCG AVDTNDAALV LQSQKNKNKY  300
KPIDKPAGHI CKGEELGGSA RVFGTPWNQV QQQRQHNTAI ASRKSFDGAR SSKKQHNGFG  360
SPKVVSPAYK PVAVPTCSQC GKSFRPEKLH SHMKSCRGLK VLAKAASTYV EKTPSPSHNP  420
VDSASGDGYF LTN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G232300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438823.1	0.0	uncharacterized protein LOC112323763 isoform X3
TrEMBL	A0A3N7FU40	0.0	A0A3N7FU40_POPTR; Uncharacterized protein
STRING	POPTR_0001s23880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20
Representative plant	OGRP8665	3	5

Link Out ? help Back to Top
Phytozome	Potri.001G232300.1
Entrez Gene	18095011