PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G235500.1
Common NamePOPTR_0001s24220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 242aa    MW: 27250.6 Da    PI: 7.8724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G235500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-18855148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed ll++ v+++G ++W++Ia+  g++Rt+k+c++rw +yl
  Potri.001G235500.1  8 KGPWTEKEDILLINFVHLFGDRRWDSIAKVSGLNRTGKSCRLRWVNYL 55
                        79********************************************97 PP
2Myb_DNA-binding55.51.3e-1761106148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Potri.001G235500.1  61 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.873355IPR017930Myb domain
SuperFamilySSF466894.77E-306102IPR009057Homeodomain-like
SMARTSM007173.0E-16757IPR001005SANT/Myb domain
PfamPF002493.4E-17855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-22962IPR009057Homeodomain-like
CDDcd001672.65E-121055No hitNo description
PROSITE profilePS5129427.50856110IPR017930Myb domain
SMARTSM007174.4E-1760108IPR001005SANT/Myb domain
PfamPF002494.9E-1661105IPR001005SANT/Myb domain
CDDcd001672.44E-1263106No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2463109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMQDEIRKGP WTEKEDILLI NFVHLFGDRR WDSIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEER LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKGAMSPS  120
LSSSNCSSSS NTTTVNSSPL PRTGETSFYD TGGLEQVALA GKNSEAVQGG EKGYSMDDIW  180
KDIENTIEPV CDGFSEKGCN FSCPSLASPS WDYFPDTLWG FGEEEGKIFL PYDDGTTILT  240
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28111020128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27791e-140stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G235500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298375.10.0transcription factor MYB48 isoform X2
SwissprotQ9LX823e-95MYB48_ARATH; Transcription factor MYB48
TrEMBLB9GES41e-179B9GES4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24220.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-94myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]