PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G241800.2
Common NamePOPTR_0001s24860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 717aa    MW: 80284.8 Da    PI: 5.057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G241800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3759.3e-1153397131373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+avs++d++ a++lL+++++++s+ gd +qRla++f+++L+arla+s++++ + ++  ++++++ ++ l+a+k+  +++P+ 
  Potri.001G241800.2 339 LRTLLILCAQAVSANDFRTANELLKQIRQHSSQFGDGTQRLAHFFANGLEARLAGSGDGTRSFFTHLASKRTTAADMLKAYKTNLQACPFK 429
                         5789*************************************************************************************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kfs + a ++Il+a+e+++++Hi+Df++ +G+QWp L+q+L+  p+gpp+lR+Tg++ p++g   +e++eetg+rLak++e+++vpfe+n+
  Potri.001G241800.2 430 KFSIFFAISMILQAAEKASTLHIVDFGVLYGFQWPILIQQLSLLPNGPPKLRLTGIELPQHGfrPSERIEETGRRLAKYCERFKVPFEYNP 520
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++a+++e + +e+L+++++E+laV+++ + ++l+de+v+++ +++++L+l+++++P+++v++  + ++n++ Fl+rf eal ++s+lfd++
  Potri.001G241800.2 521 IAAQNWERIPIEDLKINRNEVLAVHCQCRFKNLFDETVEVDCPKNAILNLIRKMNPDIFVHTIINGSYNAPFFLTRFREALFHFSSLFDMF 611
                         ******************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre+++ri+ E el gr+++nvvaceg+er+er et+++W++r  +aGFk++pl++k +++ +  l++++ + + ++e+++++++gW
  Potri.001G241800.2 612 DSTLPREDQARIMFEGELYGRDAMNVVACEGQERVERPETYKQWQARTVRAGFKTLPLEQKLMTKFRGKLKTYYHKDFVIDEDNDWMLQGW 702
                         **************************************************************************889************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r +++ S+W
  Potri.001G241800.2 703 KGRIIYASSCW 713
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.001313694IPR005202Transcription factor GRAS
PfamPF035143.2E-112339713IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MSLSPDGEAL DPSSAWSPEA EASSPSEDSD SSDPLLKYIS QMLMEENMED QPHMFHDHFA  60
LSTTEKSLYD VLGEQYPSSL DSPESYVNLE SPDSIFLASG SNCGDNTSKS TSTGTTSGTI  120
DSAKETQWVG GDVGGMNPSF SRTPLPDDNH LHSNFQPNVQ FTGNPSNGFT DTGDGLMGSS  180
AGEMVQNMFS DAESVLQFKR GLEEASKFLP IASQLVIDLE TNAVSSRQKE DAPIVVVKEE  240
NSERDSSPDG SRGRKNHERE DPDLEEGRRN KQSAVHVEES ELSEMFDKVL LWTGGQCCGD  300
DAVQDVASKN SQPDEQSNGS SGGKTRAKRQ NKKKETVDLR TLLILCAQAV SANDFRTANE  360
LLKQIRQHSS QFGDGTQRLA HFFANGLEAR LAGSGDGTRS FFTHLASKRT TAADMLKAYK  420
TNLQACPFKK FSIFFAISMI LQAAEKASTL HIVDFGVLYG FQWPILIQQL SLLPNGPPKL  480
RLTGIELPQH GFRPSERIEE TGRRLAKYCE RFKVPFEYNP IAAQNWERIP IEDLKINRNE  540
VLAVHCQCRF KNLFDETVEV DCPKNAILNL IRKMNPDIFV HTIINGSYNA PFFLTRFREA  600
LFHFSSLFDM FDSTLPREDQ ARIMFEGELY GRDAMNVVAC EGQERVERPE TYKQWQARTV  660
RAGFKTLPLE QKLMTKFRGK LKTYYHKDFV IDEDNDWMLQ GWKGRIIYAS SCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-503227151379Protein SCARECROW
5b3h_D5e-503227151379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G241800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467558.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9GJM00.0B9GJM0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24860.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]