PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G261700.1
Common NamePOPTR_1258s00200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 418aa    MW: 46442.3 Da    PI: 4.3433
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G261700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.58.6e-38127224297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         lfqrlw++eDei lLqG++d+++++g+  + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgk++ f+++hdq +fe
  Potri.001G261700.1 127 LFQRLWTDEDEIELLQGFLDYTTTKGTvnNHHNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKINSGKDFCFKSPHDQATFE 217
                         79*************************977888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         +s+kiW 
  Potri.001G261700.1 218 ISRKIWS 224
                         ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-35128224IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAAEQDDTVF DQDLEVDDED EDDRSSQSQN DDLEDDLEIE NDDTLPENDD VLSEELLEDD  60
DTSTSAAVPT AIPAVTIASI PAVTTTTTAV ASDSTPDVLK RQRVPPDTTI IPSQDSKKPQ  120
FDDTRRLFQR LWTDEDEIEL LQGFLDYTTT KGTVNNHHND TALFYDQIKS KLQLDFNKNQ  180
LVEKLRRLKK KYRNVLNKIN SGKDFCFKSP HDQATFEISR KIWSSTGKIA GFGNEDGHNL  240
DDDDGGNPNP NPNPNPNFNN HNVMMDADVA VKIEDQRSTP RSRKRSRSRP VVGVRTEEKR  300
VLMNDGFVGN ETNVNGGGSG NGNLSSVIEE TMRSCLSPLF KELLSNMAGA GMGGVGRGVG  360
GLAMNAMPLS FGVGDVMMMD DKWRKQHILE LEVYSKRLEL VQDQIRAQLD ELRSMGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G261700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006387323.20.0probable transcription factor At3g04930
SwissprotF4K5T46e-94STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A2K2C3X30.0A0A2K2C3X3_POPTR; Uncharacterized protein
STRINGPOPTR_1258s00200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-73DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]