PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G268200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 361aa    MW: 40329.9 Da    PI: 7.848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G268200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k++lC+ffa  G C  G+ C F+H+
  Potri.001G268200.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                        99****6666.*************5 PP
2zf-CCCH26.11.5e-083454526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C f+++ G+C+yG+rC++ H+
  Potri.001G268200.1 34 ICTFYQK-GICSYGSRCRYEHV 54
                        7******.***********997 PP
3zf-CCCH21.25.2e-07141163326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+ fa+ G C++Gd+C+ +Hg
  Potri.001G268200.1 141 RSICS-FAAAGSCPRGDKCPHIHG 163
                         67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3942956IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53253IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022139164IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4143163IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.21E-9200271No hitNo description
Gene3DG3DSA:3.30.40.104.3E-10202266IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00109206266No hitNo description
SMARTSM001842.9E-7207264IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297207265IPR001841Zinc finger, RING-type
PfamPF000973.7E-7207264IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180231240IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.582294323IPR000571Zinc finger, CCCH-type
SMARTSM003560.13294322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICSYGSRCR YEHVKPSRPE  60
STASSSLTVP CQPLGSNSVS LALPARNVSN GVTTVPGVPP ELSSRPFIAP TAPEWNLESA  120
QHDFLEDGEV IEPRNVKPAD RSICSFAAAG SCPRGDKCPH IHGDLCAYCG KHCLHPFRPE  180
ERDEHLKACE KKQKNLDLLK YSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI  240
RNWRSSSPTS GMDVNTSLRA CPICRKLSYF VIPSVIWYSS KEEKQEIVDT YKAKLRSIDC  300
KHFDFGNGNC PFGTSCFYKH AYRDGRLEEV VLRHLGTDDG QTVIAKNIWL SDFLGSLQIR  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G268200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442390.0EF144239.1 Populus trichocarpa clone PX0011_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441871.10.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_024441875.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-177C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K2C4A40.0A0A2K2C4A4_POPTR; C3H family protein
STRINGPOPTR_0009s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-165C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]