PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G276300.1
Common NamePOPTR_0001s28300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 221aa    MW: 24134 Da    PI: 7.4653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G276300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07148171226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C +far G+Ck G+ CkF Hg
  Potri.001G276300.1 148 GYKPCLNFAR-GFCKNGEGCKFVHG 171
                         789*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.141146173IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5148171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5150172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MFSTPSSLLP LNPIARPCNN TNPFSQSSPR VTNNGSFLDF GKKTRLRILG LFSPFLSSDN  60
IRSGSVLVPQ FSRNGGSGGG DCSNSSVDFP GEYPLDDYLL FLDGPSSKNK GFMDHKVQLG  120
GYPVANGDSH LHRRRFSESD VCFGAEDGYK PCLNFARGFC KNGEGCKFVH GGENIVEVNG  180
GGVLVGSPRE MEEHYLQQQE EMTIMKAAQQ HQQQRLAYNK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.129412e-68bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G276300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032062.11e-112PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_011032063.11e-112PREDICTED: zinc finger CCCH domain-containing protein 55-like
TrEMBLB9GG881e-161B9GG88_POPTR; Uncharacterized protein
STRINGPOPTR_0001s28300.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66967