PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G294300.1
Common NamePOPTR_0001s30150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 318aa    MW: 34568.2 Da    PI: 5.1323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G294300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-102402801055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Potri.001G294300.1 240 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 280
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14231297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12235291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-11239284No hitNo description
PfamPF000109.4E-8240280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEPIGATAEG EWSSLSGMYT SEEADFMEQL LVNCPPNQVD SSSSFGVPSS FWPNHESTMN  60
MEGANECLLY SLDIADTNLY HFSQVSSGYS GELSNGNVEE SGGNQTVAAL PEPESNLQPK  120
RESKMPASEL PLEDKSRKPP ENSKKRSRRT GDAQKNKRNV RSKKSQKVAS TGNNDEESNG  180
GLNGPVSSGC CSEDESNASQ ELNGGASSSL SSKGTTTLNS SGKTRASKGA ATDPQSLYAR  240
KRRERINERL RILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSED LWMYAPIAYN  300
GMDIGLDHLK LTTPRRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G294300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439154.10.0transcription factor bHLH85
SwissprotQ7XHI93e-68BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A3N7FV150.0A0A3N7FV15_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-50bHLH family protein