PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G295700.1
Common NamePOPTR_0001s30280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 207aa    MW: 22384.3 Da    PI: 7.3075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G295700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.59.8e-292102196
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++dCvl++ +     p++q++++ +v+k+FG++ ++++++++p+++r+ +++sl++eA  ra +Pv+Gavg++++++++
  Potri.001G295700.1   2 SCNGCRVLRKGCSEDCVLRQGIgwinnPQAQANATVFVAKFFGRAGLMSFMSSVPQSQRPSLFQSLLFEAVGRAVNPVSGAVGLLWTGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelal 96 
                         l+q+++ ++l
  Potri.001G295700.1  93 LCQKAVMAVL 102
                         ***9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.3521107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-24298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEDCVLR QGIGWINNPQ AQANATVFVA KFFGRAGLMS FMSSVPQSQR  60
PSLFQSLLFE AVGRAVNPVS GAVGLLWTGN WHLCQKAVMA VLRRGTVEPL PELEGGVSGP  120
EFDSVSESGG FRPPIDHVSS GSQKLKRKRN DDGAKYGQTT DLDLRLMYQG SESPSEESET  180
TTLESSLGDN CRFHEGGEPK LLRLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G295700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300261.11e-151LOB domain-containing protein 38
SwissprotQ9SN232e-58LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9GI821e-150B9GI82_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30280.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-60LOB domain-containing protein 38