PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G299300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 259aa    MW: 27968.2 Da    PI: 5.7235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G299300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.95e-051601971355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R+++ ++++ L+el+ +      +K + a++L +A+ YI+ Lq
  Potri.001G299300.1 160 REKLGDRIAALQELVSPF-----GKTDTASVLHEAMGYIRFLQ 197
                         89999***********98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-5141201No hitNo description
PROSITE profilePS5088811.515147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-6153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11154208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-8160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAGRESFFEG NHLVPEGNPP SFSELLFSND DDFVGVDVAH AFHFSSVEKS PTMLCFGGYN  60
YRNESEIVMF SEETKTAPQP QISGVTCSDS SSASSCNNNC SNVDVISTIS KSNRKRNGSS  120
QEVPMKCTNT VAKTPFLSQR NSKRTETKNP GSTANAKVKR EKLGDRIAAL QELVSPFGKT  180
DTASVLHEAM GYIRFLQDQV KVLCTPYLQN LPEGGENGGE ESIKNLRSRG LCLVSVDCTL  240
PVANSNGADF WSPATMGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G299300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090380.0AC209038.1 Populus trichocarpa clone POP007-J20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438786.10.0transcription factor bHLH113
TrEMBLA0A2K2C5X30.0A0A2K2C5X3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30670.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-46bHLH family protein