PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G300200.1
Common NamePOPTR_0001s30750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 245aa    MW: 26529.3 Da    PI: 9.6959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G300200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.8e-19752147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd ll+++v ++G+++W+ Iar ++ gR++k+c++rw + 
  Potri.001G300200.1  7 KGPWSPEEDALLKHLVIKHGPRSWTMIARAVP-GRSGKSCRLRWCNQ 52
                        79******************************.***********985 PP
2Myb_DNA-binding49.87.6e-1661102346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++T eEd ++++a+ ++G++ W++Iar +  gRt++ +k++w++
  Potri.001G300200.1  61 AFTREEDVIIINAHIKYGNK-WAAIARLLD-GRTDNAIKNHWNS 102
                         79******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.452157IPR017930Myb domain
SuperFamilySSF466892.15E-304100IPR009057Homeodomain-like
SMARTSM007174.2E-16655IPR001005SANT/Myb domain
PfamPF002491.1E-17752IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-24860IPR009057Homeodomain-like
CDDcd001677.67E-16951No hitNo description
SMARTSM007171.3E-1358106IPR001005SANT/Myb domain
PROSITE profilePS5129419.48759108IPR017930Myb domain
PfamPF002492.7E-1361102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2061107IPR009057Homeodomain-like
CDDcd001678.92E-1261104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDCDRVKGPW SPEEDALLKH LVIKHGPRSW TMIARAVPGR SGKSCRLRWC NQLSPVVEHR  60
AFTREEDVII INAHIKYGNK WAAIARLLDG RTDNAIKNHW NSKLKRKYAD FIVHGGMVNE  120
DGVKDKSAKT VSSSSVLERA NTPSGSEVSD AGLPGTSSLL VQENVPVVES GISNNADVST  180
ELTLSVPGMK SGQLGRDHGV GNKGLLTGDA EKTMTFGPKL LAVMQEMIRK EVRDYMVGIG  240
GKSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3641074107B-MYB
1gv2_A2e-3661073104MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-36610757158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-36610757158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-3661073104C-Myb DNA-Binding Domain
1msf_C2e-3661073104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G300200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298748.11e-180transcription factor MYB44
TrEMBLB9GHS71e-179B9GHS7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30750.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-66myb domain protein 73