PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G315300.1
Common NamePOPTR_0001s32250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 467aa    MW: 51752.6 Da    PI: 6.7042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G315300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18285333355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr+++ +g+Wv eIr p++   r+r++lg+f taeeAa a++ a+  l+g
  Potri.001G315300.1 285 FRGVRQRH-WGKWVTEIRLPRN---RTRVWLGTFNTAEEAAIAYDTAAYMLRG 333
                         8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-29283343No hitNo description
SMARTSM003803.7E-33284347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30284342IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21284342IPR016177DNA-binding domain
PROSITE profilePS5103221.72284341IPR001471AP2/ERF domain
PRINTSPR003672.6E-10285296IPR001471AP2/ERF domain
PfamPF008476.7E-12285333IPR001471AP2/ERF domain
PRINTSPR003672.6E-10307323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEDQFPKMET FMHKELAAQS SFHGMATGSR YFGDPTSWGA LAGATCHVDD GNNGTKSPSQ  60
SSPERLFSSS ESSSSADDLV SGTNLVGNIP GFGRQDYSKQ NHESCFMSGL CSINSPGGSI  120
SDYIVKESSI NPVNFSEYFP ALNNQAQVSE PPSPSSLSNT SKFPNLTLFL QEPEAFIQTS  180
FQTTWQGSKP KQAVDQLGKD QRCEPMSLFP NTSFSMPQLG QIHFQPSNDW LKINQTLANY  240
SIKGFNDYWL RTTTTQPMKY TGRRLQNQHQ KPSFSSASTS PGKLFRGVRQ RHWGKWVTEI  300
RLPRNRTRVW LGTFNTAEEA AIAYDTAAYM LRGDYAHLNF PDLKHQLKAN SLNGTTAALL  360
EAKLQLAISQ GNNISVQKKH SDDPPRTSPD KIIHDMNATK PKGLSQNTTR EELQFELEGK  420
TGCHEVIHEN QKGQEVVASD AEAVQLSRMP SLDMDMIWDS LLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19280351168ATERF1
3gcc_A2e-19280351168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G315300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559450.0EF155945.1 Populus trichocarpa RAP2.4-like protein (RAP2L4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298696.30.0ethylene-responsive transcription factor ERF062
TrEMBLA0A2K2C6P90.0A0A2K2C6P9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Representative plantOGRP1128257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-59ERF family protein