PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G320900.1

Common Name

POPTR_0001s32810g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HSF

Protein Properties

Length: 491aa MW: 54702.7 Da PI: 6.007

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G320900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109	3.5e-34	23	113	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ Potri.001G320900.1 23 FLVKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKH 104 9**************************************************************999.........********** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++i r+k Potri.001G320900.1 105 LLKNIYRRK 113 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.0E-35	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.5E-60	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.5E-37	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.2E-18	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.0E-30	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MEAGPSSATS GGGGGGGGGP APFLVKTYDM VDDSSTDEIV SWSSNKNSFV VWNPPEFARL 60 LLPTFFKHNN FSSFIRQLNT YGFRKIDPER WEFANEDFVK DQKHLLKNIY RRKPIHSHSQ 120 PQGSLVDPER AAYEEEIEKL ARDKAKLKAS ILGFEQQRSS AKLQVEDLTQ KIDTMQQRQE 180 KLLSFLEKAV QNPTFVEHLA RKIEAMDFSA YSKKRRLPQV DHPMPIAENS LVENHSSSRP 240 ESNVIHQDFP DKLRLELSPA VSDINLVSHS TQSSNEDGGS PQRKISEGNP KDALTRTSGL 300 LLAPETLELS DTGASYAFKV NPAVPRDIPA NGSPALHSLQ SNLTSNEEVD GHISCQLNLS 360 LASSPLQVNK NPYLTRIPQL GQEIGKSPES RFNESNKDSD IRVSQNNMNL GNEVRALSNS 420 QETPNNNQAP ASAPVRVNDV FWEQFLTERP GYSDNEEASS NYRANPYDER ERRIGFGVPR 480 NAKNMEQLSL *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MEAGPSSATS GGGGGGGGGP APFLVKTYDM VDDSSTDEIV SWSSNKNSFV VWNPPEFARL  60
LLPTFFKHNN FSSFIRQLNT YGFRKIDPER WEFANEDFVK DQKHLLKNIY RRKPIHSHSQ  120
PQGSLVDPER AAYEEEIEKL ARDKAKLKAS ILGFEQQRSS AKLQVEDLTQ KIDTMQQRQE  180
KLLSFLEKAV QNPTFVEHLA RKIEAMDFSA YSKKRRLPQV DHPMPIAENS LVENHSSSRP  240
ESNVIHQDFP DKLRLELSPA VSDINLVSHS TQSSNEDGGS PQRKISEGNP KDALTRTSGL  300
LLAPETLELS DTGASYAFKV NPAVPRDIPA NGSPALHSLQ SNLTSNEEVD GHISCQLNLS  360
LASSPLQVNK NPYLTRIPQL GQEIGKSPES RFNESNKDSD IRVSQNNMNL GNEVRALSNS  420
QETPNNNQAP ASAPVRVNDV FWEQFLTERP GYSDNEEASS NYRANPYDER ERRIGFGVPR  480
NAKNMEQLSL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	14	112	17	129	Heat shock factor protein 1
5d5v_B	2e-21	14	112	17	129	Heat shock factor protein 1
5d5v_D	2e-21	14	112	17	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3590	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G320900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP013984	0.0	KP013984.1 Populus simonii heat shock transcription factor A5b (HsfA5b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298675.2	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-177	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	B9GFJ0	0.0	B9GFJ0_POPTR; Uncharacterized protein
STRING	POPTR_0001s32810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53
Representative plant	OGRP9716	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-179	HSF family protein

Link Out ? help Back to Top
Phytozome	Potri.001G320900.1
Entrez Gene	7461639

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]