PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G324600.1

Common Name

POPTR_0001s33210g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 198aa MW: 21686.9 Da PI: 8.2556

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G324600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+++F ++ L H++ H Potri.001G324600.1 43 FPCLYCPRRFYTSQALGGHQNAH 65 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.55E-6	40	70	No hit	No description
PROSITE profile	PS50157	10.616	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MADPSIFNFL NHQHQQYPSS SSSSKPTKKS STNLPQPSSS RHFPCLYCPR RFYTSQALGG 60 HQNAHKRERA ALRRNNTTLN TSISTDPSLI IPSSFLNHNL PPPASTPAVP FFNQYHRYHQ 120 QALDHPMMIT NYQFPAPPST NGVYVSAPHY GGLYGVSAAA TSLDHDIGST GSGYDLSTST 180 DNDDPNDPTN IDLTLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G324600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216452	8e-89	AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298656.1	1e-142	protein LATE FLOWERING
TrEMBL	B9GFF8	1e-141	B9GFF8_POPTR; Uncharacterized protein
STRING	POPTR_0001s33210.1	1e-142	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15014	8	11
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	2e-18	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Potri.001G324600.1
Entrez Gene	7495814