PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G346600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 188aa    MW: 21431.2 Da    PI: 7.8898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G346600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.3e-14559248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                        g WT eEd++l ++++ +G g W++ a+           ++Rt+k+c++rw++yl
  Potri.001G346600.1  5 GCWTLEEDLILTNYIANHGEGVWNSLAKAARlqklqvicLKRTGKSCRLRWLNYL 59
                        78***************************************************97 PP
2Myb_DNA-binding57.33.6e-1865108146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ +++++lG++ W++Ia++++ gRt++++k++w++
  Potri.001G346600.1  65 RGNITPEEQLLIMELHAKLGNR-WSKIAKHLP-GRTDNEIKNYWRT 108
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.272159IPR017930Myb domain
SMARTSM007171.6E-8361IPR001005SANT/Myb domain
PfamPF002498.1E-13559IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-275106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-20666IPR009057Homeodomain-like
CDDcd001672.87E-8759No hitNo description
PROSITE profilePS5129426.12260114IPR017930Myb domain
SMARTSM007172.3E-1664112IPR001005SANT/Myb domain
PfamPF002498.2E-1765108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2667113IPR009057Homeodomain-like
CDDcd001672.37E-1269108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQLSGCWTLE EDLILTNYIA NHGEGVWNSL AKAARLQKLQ VICLKRTGKS CRLRWLNYLR  60
PDLRRGNITP EEQLLIMELH AKLGNRWSKI AKHLPGRTDN EIKNYWRTRI KKHTKQTEPF  120
AAGSSETNEH GSSTCQVSSA TDQMETYCPP FYQGDVGAFS GGNIPQELNE NYWSMEDLWS  180
MQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2331126106B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G346600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4970530.0FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005145.11e-121PREDICTED: myb-related protein 305 isoform X2
SwissprotP813914e-73MYB05_ANTMA; Myb-related protein 305
TrEMBLE4W6781e-120E4W678_POPCA; MYBF1
STRINGevm.model.supercontig_186.74e-90(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-74myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]