PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G361600.1
Common NamePOPTR_0001s37260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 559aa    MW: 60508.7 Da    PI: 7.0081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G361600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32213270260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Potri.001G361600.1 213 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 270
                         8****************************************.***************85 PP
2WRKY106.31.6e-33378436159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Potri.001G361600.1 378 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 436
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.871207271IPR003657WRKY domain
SuperFamilySSF1182907.45E-25210271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-26211271IPR003657WRKY domain
SMARTSM007744.1E-34212270IPR003657WRKY domain
PfamPF031061.6E-24213269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37363438IPR003657WRKY domain
SuperFamilySSF1182902.22E-29370438IPR003657WRKY domain
PROSITE profilePS5081138.825373438IPR003657WRKY domain
SMARTSM007743.1E-39378437IPR003657WRKY domain
PfamPF031063.3E-26379436IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDNNTSRSEV SDCGDPTRPE SGGGGARYKL MSPAKLPISR SACITIPPGL SPTSFLESPV  60
LLSNVKAEPS PTTGTFTKPR TALGSLSSTP YSATTVSSTA CGERKSDYFE FRPYARSNMV  120
SADINHQRST QCAQVQSQCH SQSFASPPLV KGEMEVSTNE LSLSASLHMV TSVASAPAEV  180
DSDELNQTGL SSSGLQASQS DHRAGTAPSM SSDDGYNWRK YGQKHVKGSE FPRSYYKCTH  240
PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPSRRYASG SVLSMQEDRF DKSSSLPNQG  300
DKSPGAYGQV PHAIEPNGAL ELSTGANDDT GEGAEDDDDP FSKRSRRLDA GGFDVTPVVK  360
PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTNAGCP VRKHVERASH  420
DPKAVITTYE GKHNHDVPTA RTNSHDMAGP SAVNGPSRIR PDENETISLD LGVGISSTTE  480
NQSSDQQQAL HAELIKHENQ ASGSSFRVVH ATPITAYYGV LNGGMNQYGS RQIPGESRSI  540
EIPPYPYPQN MGRLLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36213438877Probable WRKY transcription factor 4
2lex_A1e-36213438877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G361600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298853.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLB9GJX10.0B9GJX1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein