PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G372100.1

Common Name

POPTR_0001s38100g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YA

Protein Properties

Length: 224aa MW: 24522.1 Da PI: 7.0147

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G372100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2.1e-32	129	185	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh+hAl+R+Rg+gGrF Potri.001G372100.1 129 EEPVFVNAKQYHGILRRRQSRAKAESESKA-IKSRKPYLHESRHQHALKRARGCGGRF 185 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.1E-36	127	188	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.148	128	188	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.7E-27	130	185	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-23	131	153	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	133	153	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-23	162	185	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MRFEFGDSVC ITAMTSSLHD LSAGCPDNSE ADEQQNESEP QIQSSSPAMA QAHPGFSTPN 60 VQYATPQLGA GHAMAPATYP YPDPYYRSIF APYDPQPYPP QPYGAQPMVH LQLMGIQQAG 120 VPLPSDAVEE PVFVNAKQYH GILRRRQSRA KAESESKAIK SRKPYLHESR HQHALKRARG 180 CGGRFLNSKK QENQEHNGVA SGDKSQSNIN LNSDKNDIVS SND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	128	193	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12256	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G372100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182693	1e-72	AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBank	AC187864	1e-72	AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006370020.1	1e-166	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_024448159.1	1e-166	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	2e-67	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	U5GW44	1e-165	U5GW44_POPTR; Uncharacterized protein
STRING	POPTR_0001s38100.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-52	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Potri.001G372100.1
Entrez Gene	7487567

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]