PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G372100.8
Common NamePOPTR_0001s38100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 216aa    MW: 23716.2 Da    PI: 6.9598
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G372100.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32121177158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrkpylheSRh+hAl+R+Rg+gGrF
  Potri.001G372100.8 121 EEPVFVNAKQYHGILRRRQSRAKAESESKA-IKSRKPYLHESRHQHALKRARGCGGRF 177
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.1E-36119180IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.148120180IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-27122177IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-23123145IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860125145IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-23154177IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRFEFGDSVC ITAMTSSLHD LSDNSEADEQ QNESEPQIQS SSPAMAQAHP GFSTPNVQYA  60
TPQLGAGHAM APATYPYPDP YYRSIFAPYD PQPYPPQPYG AQPMLMGIQQ AGVPLPSDAV  120
EEPVFVNAKQ YHGILRRRQS RAKAESESKA IKSRKPYLHE SRHQHALKRA RGCGGRFLNS  180
KKQENQEHNG VASGDKSQSN INLNSDKNDI VSSND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21120185166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.122560.0bud
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G372100.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826933e-67AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBankAC1878643e-67AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448173.11e-160nuclear transcription factor Y subunit A-7 isoform X4
SwissprotQ84JP12e-67NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2K2C9U21e-158A0A2K2C9U2_POPTR; NF-YA family protein
STRINGPOPTR_0001s38100.11e-142(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.18e-52nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]