PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G372500.1

Common Name

POPTR_0001s38140g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BES1

Protein Properties

Length: 233aa MW: 24420.8 Da PI: 8.7829

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G372500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	113.9	2.5e-35	12	104	5	95
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpl.eeaeaagssasaspess 93 +++ ++E++k+RER+RRai+++i+ GLR++G+y+l r+D+n+Vl+ L++eAGwvve+DGttyr k ++ + + ++s++++p++s Potri.001G372500.1 12 SGRSESDKERTKLRERQRRAITTRIFHGLRKYGGYQLSPRSDINQVLRELAKEAGWVVEPDGTTYRyKVVSRCpTCGVIPNTSTNTTPTTS 102 3455678899********************************************************7555665678899999999999988 PP DUF822 94 lq 95 ++ Potri.001G372500.1 103 ST 104 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.6E-31	14	96	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MKRDGSSTSS SSGRSESDKE RTKLRERQRR AITTRIFHGL RKYGGYQLSP RSDINQVLRE 60 LAKEAGWVVE PDGTTYRYKV VSRCPTCGVI PNTSTNTTPT TSSTVIACGG GGGGGGGDCS 120 PTTSPRCNID PTMINPYNNN SHAGSTSLYG HEHGSAGGCT GDVDNNNSLA FYMYNGLASG 180 LHHPSTATAT AAAAIIGGGM KVQVPSQQQL QGTYIQEARA SNQNTPVGSL DQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G372500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298893.3	1e-171	uncharacterized protein LOC7485134
TrEMBL	A0A2K2C9U6	1e-170	A0A2K2C9U6_POPTR; Uncharacterized protein
STRING	POPTR_0001s38140.1	1e-137	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13979	16	22
Representative plant	OGRP10087	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	2e-19	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Potri.001G372500.1
Entrez Gene	7485134